ctp-builder documentation¶

CTP-builder is tool for building and complete CTP (Clinical Trial Processor) configuration based on a simple configuration files. The idea is have templates for specific needs for CTP and easily create new configurations based on these templates. This also makes it easier to deploy CTP in a k8s cluster environment. CTP configuration can be created in a simple YAML file and then converted to a full CTP configuration using either the command line interface or python API.

For example, the following YAML configuration file:

version: 1
template: full_service
server:
   port: 8080
   storage: /mnt/data
pipeline:
   name: anonymization_project
   import_type: Archive
   import_path: /data/archive
   export_type: Directory
   export_path: /data/organized

is turned into a full CTP configuration including script files and looup tables.

<Configuration>
   <Server
      maxThreads="20"
      port="8080"/>
   <Pipeline name="anonymization_project">
      <ArchiveImportService
         class="org.rsna.ctp.stdstages.ArchiveImportService"
         logConnections="rejected"
         name="ArchiveImport"
         treeRoot="/data/archive"
         quarantine="/mnt/data/quarantine/anonymization_project/ArchiveImport"
         root="/mnt/data/root/anonymization_project/ArchiveImport"
         acceptDicomObjects="yes"/>
      <ObjectTracker
         name="ObjectTracker"
         class="org.rsna.ctp.stdstages.ObjectTracker"
         root="/mnt/data/root/anonymization_project/ObjectTracker" />
      <DicomFilter
         class="org.rsna.ctp.stdstages.DicomFilter"
         name="DicomFilter"
         quarantine="/mnt/data/quarantine/anonymization_project/DicomFilter"
         root="/mnt/data/root/anonymization_project/DicomFilter"
         script="scripts/ModalityFilter.script"/>
      <DicomFilter
         class="org.rsna.ctp.stdstages.DicomFilter"
         name="DicomFilter"
         quarantine="/mnt/data/quarantine/anonymization_project/DicomFilter"
         root="/mnt/data/root/anonymization_project/DicomFilter"
         script="scripts/SeriesDescriptionBlacklist.script"/>
      <DicomAnonymizer
         id = "Anonymizer"
         class="org.rsna.ctp.stdstages.DicomAnonymizer"
         lookupTable="resources/lookuptable"
         name="DicomAnonymizer"
         quarantine="/mnt/data/quarantine/anonymization_project/DicomAnonymizer"
         root="/mnt/data/root/anonymization_project/DicomAnonymizer"
         script="scripts/DicomAnonymizer.script"/>
      <DirectoryStorageService
         class="org.rsna.ctp.stdstages.DirectoryStorageService"
         name="DirectoryExport"
         quarantine="/mnt/data/quarantine/anonymization_project/DirectoryExport"
         root="/mnt/data/root/anonymization_project"
         structure="(0010,0020)/(0008,0020)/0020,000d/(0008,103e)"
         path="/data/organized"/>
   </Pipeline>
</Configuration>